I had a software program about 15 years ago that basically did this, and you could cut through layers of the human body to see didn't muscle layers and whatnot. I bet 3 1/2 floppies are somewhere in my dad's office still. Sorry that's not helpful at all
Check out http://opensim.stanford.edu/work/index.html . It seems to be used exclusively in biomechanics research... but with a little work, I can see turning this into what I want.
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http://opensim.stanford.edu/work/index.html
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